Read simulation
From BITS wiki
- ART - http://bioinformatics.joyhz.com/ART/
- DWGSIM - http://sourceforge.net/apps/mediawiki/dnaa/index.php?title=Whole_Genome_Simulation
- Stampy - http://www.well.ox.ac.uk/project-stampy
- pIRS - ftp://ftp.genomics.org.cn/pub/pIRS
- Mason - http://www.seqan.de/projects/mason/
- MetaSim - http://ab.inf.uni-tuebingen.de/software/metasim/
Differences
- platforms simulated
- control of number of simulated sequences
- control of coverage
- error models of real sequencing data
- simulation of quality
- mutating the reference
- encoding the simulated read name
- paired end fragment information
