How to install Bioconductor packages in R
From BITS wiki
Go to parent Analyze your own microarray data in R/Bioconductor
| How to install BioConductor packages in R ? |
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To install Bioconductor packages type the following commands in R:
source("http://www.bioconductor.org/biocLite.R") biocLite(“packagename”) |
To install the annotation packages for the arrays that you used in your experiment, go to the list of annotation packages generated by Affymetrix.
In this list you can find the name of the cdf file that corresponds to the array that you have used (in our example we used ATH1 arrays so the cdf file is called ath1121501cdf).
| How to install Affymetrix annotation packages in R ? |
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| You can install the ath1121501cdf package as any other BioConductor package using the biocLite() method. |
To install custom annotation packages (not from Affymetrix), go to BrainArray's list of custom annotation packages.
| How to install custom annotation packages in R ? |
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| To use these cdf files, download the zip file from the website and install from the local zip file:
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