Creating a workflow in Galaxy

• Run the tool (FastQC) on one dataset, and follow screenshots below to create a workflow of it.
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• Now, make sure you have some datasets in your history, to run the workflow on.

• Check your workflow by clicking Workflow in the menu bar at the top.

• Click on the workflow and choose run: a new window appears
• In a workflow you can select multiple input datasets. Click on small button next to Input Dataset.

• Select multiple dataset by holding shift and clicking on the datasets. The workflow will be run on them in parallel.

• Click Run Workflow. The tool (here FastQC) is run on all datasets.

After a while, all jobs will be finished. Workflows are a powerful tool!