NGS data analysis tools

Extra tools not used in the sessions but that could help

Download the source or the compiled tools as described in the target web pages.

fastQValidator to diagnose issues in FastQ data: https://github.com/statgen/fastQValidator
UMI-tools for demultiplexing single cell data and more: https://github.com/CGATOxford/UMI-tools (tutorial)
subRead 'featureCount' tool as alternative to htseq-count http://subread.sourceforge.net/. There is also a R package associated to this and named Rsubread