NGS data analysis tools
From BITS wiki
Extra tools not used in the sessions but that could help
Download the source or the compiled tools as described in the target web pages.
- fastQValidator to diagnose issues in FastQ data: https://github.com/statgen/fastQValidator
- UMI-tools for demultiplexing single cell data and more: https://github.com/CGATOxford/UMI-tools (tutorial)
- subRead 'featureCount' tool as alternative to htseq-count http://subread.sourceforge.net/. There is also a R package associated to this and named Rsubread
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