RNA-Seq analysis in Galaxy
From BITS wiki
Slides
- Working to the Goal
- Investigating Raw Data
- Mapping to assign Reads to Genes
- Extracting counts and Analysing
- Detecting Differential Expression
- The Biology behind observed changes
- keywords (day1)
Exercises
- Choosing the ideal design of your RNA-Seq experiment
- Preprocessing raw RNA-Seq data
- Mapping processed data
- Extracting counts and investigating experimental factors
- Detecting differential expression from a count table
- Exploring the biology behind observed changes
Links
- The BITS Galaxy server (with tool specific for this session)
- The Main Galaxy server (not all required tools are present there!)
- Other public galaxy instances in various research centers