Installing cutadapt
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Installing cutadapt
Since cutadapt is written in Python you can install it using pip.
Install cutadapt using pip. |
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Installing tools using pip is very simple, use the following command:
pip install cutadapt Chances are that you get an error message saying "fatal error: pyconfig.h: No such file or directory".
Looking up this error in Google learns that we don't have the correct dependencies installed. To solve this we need to run the following command: apt-get install python-dev libxml2-dev libxslt-dev If you repeat the cutadapt installation, it should go fine this time. |
If pip is not yet installed, the terminal will show an error message saying that pip is currently not installed. You can install pip using apt-get.
How to install pip ? |
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Installing pip is very simple, use the following command:
apt-get install python-pip
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